MEDiCINe: Motion Correction for Neural Electrophysiology Recordings
Watters N, Buccino AP, Jazayeri M
BioRxiv (2024) DOI:10.1101/2024.11.06.622160

Mental navigation in the primate entorhinal cortex
Neupane S, Fiete I, Jazayeri M
Nature (2024) DOI:10.1038/s41586-024-07557-z [bioRxiv (2022) DOI: 10.1101/2022.12.15.520640]

Computational basis of hierarchical and counterfactual information processing
Ramadan M, Tang C, Watters N, Jazayeri M
bioRxiv (2024) DOI: 10.1101/2024.01.30.578076

Keeping time and rhythm by internal simulation of sensory stimuli and behavioral actions
De Lafuente V, Jazayeri M, Merchant H, García-Garibay O, Cadena-Valencia J, Malgón AM
Science Advances (2024) DOI: 10.1126/sciadv.adh8185

Mixtures of strategies underlie rodent behavior during reversal learning
Le NM, Yildirim M, Wang Y, Sugihara H, Jazayeri M, Sur M
PLOS Computational Biology (2023) [Previously published in bioRxiv (2022) DOI: 10.1101/2022.03.14.484338]

Neural Foundations of Mental Simulation: Future Prediction of Latent Representations on Dynamic Scenes
Nayebi A, Rajalingham R, Jazayeri M, Yang GR
arXiv (2023) DOI: arXiv:2305.11772v1

Parametric control of flexible timing through low-dimensional neural manifolds
Beiran M*, Meirhaeghe N*, Sohn H, Jazayeri M^†, Ostojic S^†
Neuron (2023) DOI: 10.1016/j.neuron.2022.12.016 [Previously published in bioRxiv 467806]

Synaptic basis of a sub-second representation of time in a neural circuit model
Barri A, Wiechert MT, Jazayeri M, DiGreggorio DA
Nature Communications (2022) DOI: 10.1038/s41467-022-35395-y [Previously published in bioRxiv (2022) 480693]

Modeling human eye movements with neural networks in a maze-solving task
Li J, Watters N, Wang Y, Sohn H, Jazayeri M 
arXiv (2022) DOI: arXiv:2212.10367

A large-scale neural network training framework for generalized estimation of single-trial population dynamics
Keshtkaran MR*, Sedler AR*, Chowdhury RH, Tandon R, Basrai D, Nguyen SL, Sohn H, Jazayeri M, Miller LE & Pandarinath C
Nature Methods (2022) DOI: 10.1038/s41592-022-01675-0 [Previously published in bioRxiv (2022) DOI: 10.1101/2021.01.13.426570]

Recurrent neural networks with explicit representation of dynamic latent variables can mimic behavioral patterns in a physical inference task
Rajalingham R, Piccato A, Jazayeri M
Nature Communications (2022) DOI: 10.1038/s41467-022-33581-6 [Previously published in bioRxiv (2021) DOI: 10.1101/2021.01.14.426741]

Dynamic tracking of objects in the macaque dorsomedial frontal cortex
Rajalingham R, Sohn H, Jazayeri M
bioRxiv (2022) DOI: 10.1101/2022.06.24.497529

Interpreting neural computations by examining intrinsic and embedding dimensionality of neural activity
Jazayeri M, Ostojic S.
Current Opinion in Neurobiology (2021) DOI: 10.1016/j.conb.2021.08.002 [Previously published in arXiv (2021) DOI: arXiv:2107.04084]

Neural Latents Benchmark ’21: Evaluating latent variable models of neural population activity
Pei F, Ye J, Zoltowski D, Wu A, Chowdhury RH, Sohn H, O’Doherty JE, Shenoy KV, Kaufman MT, Churchland M, Jazayeri M, Miller LE, Pillow J, Park IM, Dyer EL, Pandarinath C
arXiv (2021) DOI: arXiv:2109.04463

A precise and adaptive neural mechanism for predictive temporal processing in the frontal cortex
Meirhaeghe N, Sohn H, Jazayeri M.
Neuron (2021) DOI: 10.1016/j.neuron.2021.08.025 [Previously published in bioRxiv (2021) DOI: 10.1101/2021.03.10.434831]

Validating model-based Bayesian integration using prior–cost metamers
Sohn H, Jazayeri M.
PNAS (2021) DOI: 10.1073/pnas.2021531118 [Previously published in bioRxiv (2020) DOI: 10.1101/2020.08.11.246355]

Modular Object-Oriented Games: A Task Framework for Reinforcement Learning, Psychology, and Neuroscience
Watters N, Tenenbaum J, Jazayeri M.
arXiv (2021) DOI: arXiv.2102.12616

Neural Encoding and Representation of Time for Sensorimotor Control and Learning
Balasubramaniam R, Haegens S, Jazayeri M, Merchang H, Sternad D, Song JH.
JNeurosci (2020) DOI: 10.1523/JNEUROSCI.1652-20.2020

A Network Perspective on Sensorimotor Learning
Sohn H, Meirhaeghe N, Rajalingham R, Jazayeri M.
Trends in Neuroscience (2020) DOI: 10.1016/j.tins.2020.11.007

Reinforcement regulates timing variability in thalamus.
Wang J, Hosseini E, Meirhaeghe N, Akkad A, Jazayeri M.
eLife (2020) DOI: 10.7554/eLife.55872 [Previously published in bioRxiv (2020) 583328]

An open resource for non-human primate optogenetics.
Tremblay S, Acker L, Afraz A, Albaugh DL, Amita H, Andre AR, Angelucci A, Aschner A, Blan PF, Basso MA, Benvenuti G, Bohlen MO, Caiola MJ, Calcedo R, Cavanaugh J, Chen Y, Chen S, Chemov MM, Clark AM, Dai J, Debes SR, Deisseroth K, Desimone R, Dragoi V, Egger SW, Eldridge MAG, El-Nahal HG, Fabbrini F, Federer F, Fetsch CR, Fortuna MG, Friedman RM, Fujii N, Gail A, Galvan A, Ghosh S, Gieselmann MA, Gulli RA, Hikosaka O, Hosseini EA, Hu X, Hüer J, Inoue K, Janz R, Jazayeri M, Jiang R, Ju N, Kar K, Klein C, Kohn A, Komatsu M, Maeda K, Martinez-Trujillo JC, Matsumoto M, Maunsell JHR, Mendoza-Halliday D, Monosov IE, Muers RS, Nurminen L, Ortiz-Rios M, O’Shea DJ, Palfi S, Petkov CI, Pojoga S, Rajalingham R, Ramakrishnan C, Remington E, Revsine C, Roe AW, Sabes PN, Saunders RC, Scherberger H, Schmid MC, Schultz W, Seidemann E, Senova YS, Shadlen MN, Sheinberg DL, Siu C, Smith Y, Solomon SS, Sommer MA, Spudich JL, Stauffer WR, Takada M, Tank S, Thiele A, Treue S, Vanduffel W, Vogels R, Whitmire MP, Wichmann T, Wurtz RH, Xu H, Yazdan-Shahmorad A, Shenoy KV, DiCarlo JJ, Platt ML
Neuron (2020) DOI: 10.1016/j.neuron.2020.09.027 [Science article by Kelly Servick]

Low-dimensional dynamics for working memory and time encoding.
Cueva CJ, Saez A, Marcos E, Genovesio A, Jazayeri M, Romo R, Salzman CD, Shadlen MN, Fusi S.
PNAS (2020) DOI: 10.1073/pnas.1915984117 [Previously published in bioRxiv (2019) 504936.]

Engineering recurrent neural networks from task-relevant manifolds and dynamics.
Pollock E, Jazayeri M. 
PLOS Computational Biology (2020) DOI: 10.1371/journal.pcbi.1008128 [Previously published in bioRxiv (2019) 883207.] 

A neural circuit model for human sensorimotor timing.
Egger SW*, Le NM*, Jazayeri M.
Nature Communications (2020) DOI: 10.1038/s41467-020-16999-8 [Previously published in bioRxiv (2019) 712141.]

Distinct spatiotemporal mechanisms underlie extra-classical receptive field modulation in macaque V1.
Henry CA, Jazayeri M, Shapley RM, Hawken MJ.
eLife (2020) DOI: 10.7554/eLife.54264

Internal models of sensorimotor integration regulate cortical dynamics.
Egger SW, Remington ED, Chang CJ, Jazayeri M.
Nature Neuroscience (2019) DOI: 10.1038/s41593-019-0500-6

Bayesian computation through cortical latent dynamics.
Sohn H*, Narain D*, Meirhaeghe N*, Jazayeri M.
Neuron (2019) DOI: 10.1016/j.neuron.2019.06.012 [Prviously published in bioRxiv (2018) 465419.]

Hierarchical reasoning by neural circuits in the frontal cortex.
Sarafyazd M, Jazayeri M.
Science (2019) DOI: 10.1126/science.aav8911

Late Bayesian inference in mental transformations.
Remington ED, Parks TV, Jazayeri M. 
Nature communications (2018) DOI: 10.1038/s41467-018-06726-9 [Previously published in bioRxiv 130092.]

Entrainment and maintenance of an internal metronome in supplementary motor area.
Cadena-Valencia J, García-Garibay O, Merchant H, Jazayeri M, de Lafuente V.
Elife. (2018) DOI: 10.7554/eLife.38983 [Previously pubshiled in bioRxiv 394783.]

A dynamical systems perspective on flexible motor timing.
Remington ED, Egger SW, Narain D, Wang J, Jazayeri M.
Trends in Cognitive Sciences (2018) DOI: 10.1016/j.tics.2018.07.010

A nonlinear updating algorithm captures suboptimal inference in the presence of signal-dependent noise.
Egger SW, Jazayeri M.
Scientific Reports (2018) DOI: 10.1038/s41598-018-30722-0

Flexible sensorimotor computations through rapid reconfiguration of cortical dynamics.
Remington ED, Narain D, Hosseini E, Jazayeri M.
Neuron (2018) DOI: 10.1016/j.neuron.2018.05.020 [Previously published in bioRxiv (2018) 261214.]

Integration of speed and time for estimating time-to-contact.
Chang CJ, Jazayeri M.
PNAS (2018) DOI: 10.1073/pnas.1713316115

A cerebellar mechanism for learning prior distributions of time intervals.
Narain D, Remington ED, De Zeeuw CI, Jazayeri M.
Nature communications (2018) DOI: 10.1038/s41467-017-02516-x

Flexible timing by temporal scaling of cortical responses.
Wang J*, Narain D*, Hosseini E, Jazayeri M.
Nature Neuroscience (2018) DOI: 10.1038/s41593-017-0028-6 [Previously published in bioRxiv 155390.]

Zooming Out of Single Neurons Reveals Structure in Mnemonic Representations.
Jazayeri M.
Neuron (2017) DOI: 10.1016/j.neuron.2017.12.009 [Preview on Rossi-Pool et al. (2017). Neuron]

Navigating the neural space in Search of the neural code.
Jazayeri M, Afraz A.
Neuron (2017) DOI: 10.1016/j.neuron.2017.02.019

An integral role for timing in interception.
Chang CJ, Jazayeri M.
bioRxiv (2017) DOI: 10.1101/155531

Optogenetics Advances in Primate Visual Pathway.
Jazayeri M, Remington ED.
Neuron (2016) DOI: 10.1016/j.neuron.2016.03.024 [Preview on Klein et al. (2016) Neuron.

Time in cortical circuits.
Finnerty GT, Shadlen MN, Jazayeri M, Nobre AC, Buonomano DV.
J Neurosci. (2015) DOI: 10.1523/JNEUROSCI.265-15.2015

A Neural mechanism for sensing and reproducing a time interval. 
Jazayeri M, Shadlen MN.
Curr Biol. (2015) DOI: 10.1016/j.cub.2015.08.038

Representation of accumulating evidence for a decision in two parietal areas. 
de Lafuente V, Jazayeri M, Shadlen MN.
Neurosci.(2015) DOI: 10.1523/JNEUROSCI.2451-14.2015

Neural coding of uncertainty and probability.
Ma WJ, Jazayeri M.  
Annu Rev Neurosci. (2014) DOI: 10.1146/annurev-neuro-071013-014017

The spread of attention across features of a surface in human visual cortex. 
Ernst ZR, Boynton GM, Jazayeri M.
Neurophysiol.(2013) DOI: 10.1152/jn.00828.2012

Saccadic eye movements evoked by optogenetic activation of primate V1.
Jazayeri M, Lindbloom-Brown Z, Horwitz GD.
Nat Neurosci. (2012) DOI: 10.1038/nn.3210 [Recommended by Faculty of 1000 Biology]

Dynamics of MT cell responses to grating triplets. 
Jazayeri M, Wallisch P, Movshon JA.
Neurosci.(2012) DOI: 10.1523/JNEUROSCI.5787-11.2012

Decoding the activity of neuronal populations in macaque primary visual cortex. 
Graf A, Kohn A, Jazayeri M, Movshon JA.
Nat Neurosci. (2011) DOI: 10.1038/nn.2733

Temporal context calibrates interval timing.
Jazayeri M,Shadlen MN.
Nat Neurosci. (2010) DOI: 10.1038/nn.2590 [News and Views in Nat Neurosci] [Neuropod podcast] [Recommended byFaculty of 1000 Biology]

Probabilistic sensory recoding. 
Jazayeri M. 
Curr Opin Neurobiol. (2008) DOI: 10.1016/j.conb.2008.09.004 [Invited paper with editorial review]

Executed and observed movements have different distributed representations in human aIPS. 
Dinstein I, Gardner JL, Jazayeri M, Heeger DJ.
J Neurosci. (2008) DOI: 10.1523/JNEUROSCI.3585-08.2008

Integration of sensory evidence in motion discrimination. 
Jazayeri M, Movshon JA.
Journal of Vision (2007) DOI: 10.1167/7.12.7

A new perceptual illusion reveals mechanisms of sensory decoding.
Jazayeri M, Movshon JA.
Nature (2007) DOI: 10.1038/nature05739 [Recommended by Faculty of 1000 Biology]

Optimal representation of sensory information by neural populations. 
Jazayeri M, Movshon JA.
Nat Neurosci. (2006) DOI: 10.1038/nn1691

Multimodality in a dynamic feedback network with stochastic input. 
Jazayeri M, Skinner FK.
Neurocomputing (2003) DOI: 10.1016/S0925-2312(02)00787-7

A dynamical feedback mechaniqsm for the generation of hippocampal field rhythms.
Jazayeri M, Zhang L, Skinner FK.
Neurocomputing (2001) DOI: 10.1016/S0925-2312(01)00439-8